PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09213
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 232aa    MW: 26517.1 Da    PI: 10.1534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09213genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-16137227199
               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               f+k +++s+v+   +l lp +f+  +  g    ++ t+tlede+g +++ ++   k++    l++GW++F+ +++L +gD +vF+ +     +++v ++r+
  EMT09213 137 FVKPMKQSHVTGGFWLGLPSQFCGLYlpG----SDDTITLEDEEGVEYKTRYLALKTG----LSAGWRRFALDHNLVDGDCLVFEWV--VWNTFYVYIIRQ 227
               89*********************888643....4569***************666666....***********************54..444559999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-22132228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-19134228IPR015300DNA-binding pseudobarrel domain
CDDcd100176.62E-26135226No hitNo description
PROSITE profilePS5086311.66137228IPR003340B3 DNA binding domain
PfamPF023621.7E-14137227IPR003340B3 DNA binding domain
SMARTSM010191.9E-20137228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAGAIAYEEQ RRRQIEENNR KLEELRLHQL SAAVREAAGP KFSPVRSEAK SVKPKQGPRG  60
APVRQSGRVA SLPKQPKYRY EDDYPTLVEK KKIRRRASST RSDIINRVDA TDEARRHANS  120
KAQELLRKLV PGGNPSFVKP MKQSHVTGGF WLGLPSQFCG LYLPGSDDTI TLEDEEGVEY  180
KTRYLALKTG LSAGWRRFAL DHNLVDGDCL VFEWVVWNTF YVYIIRQSSY YK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-100HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160679.11e-96B3 domain-containing protein Os06g0194400-like
SwissprotQ69V362e-77Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM8C2061e-172M8C206_AEGTA; B3 domain-containing protein
STRINGEMT092131e-172(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-44B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]