PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT09593

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

HB-other

Protein Properties

Length: 219aa MW: 25644.8 Da PI: 9.4185

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT09593	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	79	132	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ +eq++eLe++F++ +yp+++ r+ L+++lg++ +qVk+WFqN+R k EMT09593 79 NYHRLRREQIQELEAVFREIPYPDEKLRKSLSERLGMNAQQVKFWFQNHRSNSK 132 4556789*******************************************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-16	57	134	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.55E-15	67	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.58	74	134	IPR001356	Homeobox domain
CDD	cd00086	1.59E-11	76	132	No hit	No description
SMART	SM00389	7.7E-13	76	138	IPR001356	Homeobox domain
Pfam	PF00046	5.7E-16	79	132	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	109	132	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDGEWPQYNS VVHNDLDPFM TSEHSHLLQH DHGDETYGRL LGATPNVGMI DNTNVVAGNQ 60 GNNNVKTYSE QRMETRRTNY HRLRREQIQE LEAVFREIPY PDEKLRKSLS ERLGMNAQQV 120 KFWFQNHRSN SKGKTQRRET TTLKLENQML KSDRQAIMSA MENSTCLKCR GAVVQTQDTS 180 ERQRLFKENM KLQEELRLAA THLKEGLQQN GMWPRLTRN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167365.1	1e-158	homeobox-leucine zipper protein HDG7-like
TrEMBL	M8C352	1e-164	M8C352_AEGTA; Homeobox-leucine zipper protein ROC4
STRING	EMT09593	1e-164	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16772	5	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52170.1	4e-26	homeodomain GLABROUS 7