PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09679
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 307aa    MW: 32910.4 Da    PI: 6.8669
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09679genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18227260134
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
               C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  EMT09679 227 CTHCQIDKTPQWRAGPLGPKTLCNACGVRYKSGR 260
               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.6E-16221271IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.332221257IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15225284No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14225258IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.45E-15226283No hitNo description
PfamPF003203.3E-16227260IPR000679Zinc finger, GATA-type
PROSITE patternPS003440227252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MASGRFMEEM MREHEQSLLE ATCGGLFDHI EDLLDFPKED SAEDVLLLDA PVPDSPLAAR  60
VLGGGVPPPA PASLEGQQQA SLMVPPPPPA GDHSAAFLGA LGDTHIGTSF SGSGRPWSVP  120
LSPRPEPPVL VIPARARSKR SRASAFPAAI RAAVPAPEAT ILVPTPMFSS TSSYSEEPEC  180
IAESNSQPKK KKKAKRPTPP VTSDAEGDAD YEEGSGTALA PGEVRRCTHC QIDKTPQWRA  240
GPLGPKTLCN ACGVRYKSGR LFPEYRPAAS PTFVPAIHSN SHKKVVEMRQ KVEPKGDDLL  300
QFIRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536490.0AK353649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001M24.
GenBankAK3566850.0AK356685.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1038B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165199.11e-123GATA transcription factor 11-like
RefseqXP_020165203.11e-123GATA transcription factor 11-like
TrEMBLM8BS930.0M8BS93_AEGTA; GATA transcription factor 11
STRINGEMT096790.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-38GATA family protein