PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT10121

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NF-YC

Protein Properties

Length: 298aa MW: 31672 Da PI: 3.7838

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT10121	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	74.7	1.3e-23	37	123	4	87
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 fw ++ +e + df+++ lP+ar+k++++a+ed mi+a++P+ l+k celf+ el++r+w a++ +rr + sdia+a + t+ EMT10121 37 GFWRERqeeMEATVDFNDRILPMARLKRLIRAEEDGMMIAADTPAYLAKLCELFVQELAVRAWACAQSHRRRIILESDIAEAAAYTE 123 58976556699********************************************************************99887664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.37E-17	43	119	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.5E-20	50	118	IPR009072	Histone-fold
Pfam	PF00808	4.3E-12	57	118	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGTEQGKEGT GAGEGRVEVR TGPRPALPAP QQRAVDGFWR ERQEEMEATV DFNDRILPMA 60 RLKRLIRAEE DGMMIAADTP AYLAKLCELF VQELAVRAWA CAQSHRRRII LESDIAEAAA 120 YTENSGTDFA GENSAAETMA SPPRPAGPAG AVALPTVHPA AYYLCAYPVT NDVEAFAVGN 180 TDPDVIPPEI VVGDVAIPPD IIEGNVADGN GDGGQQQQQS ENLGGNGESV VVPQSNDVQE 240 DGADGMFLEE ILMDEDLMFP DAELFPLVGA APGPEDFIVD QDVLDDVFAN PSSSASSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	9e-18	44	123	5	84	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT008988	0.0	BT008988.1 Triticum aestivum clone wdk2c.pk009.e4:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153110.1	1e-106	uncharacterized protein LOC109738417
Refseq	XP_020159981.1	1e-106	uncharacterized protein LOC109745254
TrEMBL	M8B7Y9	0.0	M8B7Y9_AEGTA; Nuclear transcription factor Y subunit C-2
STRING	EMT10121	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13968	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	8e-22	nuclear factor Y, subunit C2