PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10769
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 820aa    MW: 91112.7 Da    PI: 8.9584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10769genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.9e-19193292198
               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++lv++++
  EMT10769 193 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKLVMGFR 291
               99**************************555567778***************9989999999***9.********************887.7777787777 PP

               - CS
        B3  98 r 98 
               +
  EMT10769 292 K 292
               6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-32184302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-21190293IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-24191292No hitNo description
SMARTSM010194.0E-22193293IPR003340B3 DNA binding domain
PfamPF023623.7E-16193292IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547193294IPR003340B3 DNA binding domain
PROSITE profilePS5105014.643454504IPR011124Zinc finger, CW-type
PfamPF074961.5E-11459501IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MLCLWPLPPA PFPLGEKFNF LALSILTISF PLLSGWRSSS LSSAIYSTKR SLVGGTVRFV  60
GSGGVQCVNC MKNPGPQPVP CQVAPKLFLP PQNNQRLFGK SDEFLPGRPL ESPSLMLDSR  120
NDDIAIIAKS NHPFMHAQRA RHFLTRPPRV AEGAAFDPMR DGFPHLRVAR PPAEGRGRNQ  180
LLPRSNSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW  240
HFQFRFWPNN NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP  300
DSQISAIATG SLLGDSFFSN TNENLSIVSG YSGFLQSMKG AADLQPSSLF DHHANSADGD  360
VSWLKADRFG GRPDEGSFQF LHKRSRNIGS KSRRLLMDNE EALELKLSWE EAQELLRPAP  420
SAKPTIVMIE DYEFEEYDEP PVFAKRSIFT SRSTGEQDQW IQCDDCSKWR RVPLNVIIAS  480
KWRCADNTWD PKSCSCSAPE ELAHKELQSI LQQYEEIRRR KSNYFLKQSI PEMDASSLDA  540
LATAAVFGEV GNQGAASVAT TTKHPRHRPG CTCIVCIQPP SGKGPKHNPA CTCNVCMTVR  600
RRFKTLMMRK KQRQSEREEA EASKRIAWVG RDEPEGSNLS RSPRTVDTTR DCDVIMFDKA  660
DANKGHIDLN FHPASREEEQ QHGGQPRVSM VSLLEVANRP LESYMKQNGL GSDFINGHHR  720
DACGENFKSS ILSGPGLRVM KPHLRKSAQI DSVTGPVEMT VLTFLPRSTF QPNNILKNEP  780
QEYSGAKLKP FQAISLETMT IRRRGGREAD PLAGRSSVDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-5918629517126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1599610RRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586790.0AK358679.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1081G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158213.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLM8BVH10.0M8BVH1_AEGTA; B3 domain-containing protein
STRINGEMT107690.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-161HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]