PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10884
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 23728.4 Da    PI: 6.6287
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10884genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.51.9e-191058147
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE..EEEE-TTSEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaeva..viifsstgkly 47
              kri+++  rqvtf+kRr ++lKKA EL vLCd +v+  +++fsstgkl 
  EMT10884 10 KRIDDDGLRQVTFCKRRGTLLKKACELAVLCDDDVSlgLVVFSSTGKLA 58
              79*****************************99998446********95 PP
2K-box55.62.3e-1998186897
     K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
               + +++++++    +a+L++ei  L+ ++R+  GedL s  + eL+ Leqq+e++l k+R++K+ell +q+ el +k ++l++en+aL ++
  EMT10884  98 DDDHHQQQQVLVGVARLRQEIGHLEASLRRQTGEDLPS-GVAELHDLEQQVESALGKVRQTKDELLNQQLGELHRKVQNLEDENNALLHM 186
               34556667777899**********************88.9**********************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-21264IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.315257IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-11424IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-19481IPR002100Transcription factor, MADS-box
PfamPF003192.2E-161157IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-112439IPR002100Transcription factor, MADS-box
PfamPF014865.9E-1999186IPR002487Transcription factor, K-box
PROSITE profilePS5129712.074104194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRRGKLEVK RIDDDGLRQV TFCKRRGTLL KKACELAVLC DDDVSLGLVV FSSTGKLAGD  60
YCSPNTSWSE LIQRYERERE STSSTQLHVQ GRITNQNDDD HHQQQQVLVG VARLRQEIGH  120
LEASLRRQTG EDLPSGVAEL HDLEQQVESA LGKVRQTKDE LLNQQLGELH RKVQNLEDEN  180
NALLHMNADR QDRAAARGGP RQNSDWGRII
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177039.11e-136MADS-box transcription factor 29-like
TrEMBLM8BVR81e-151M8BVR8_AEGTA; MADS-box transcription factor 29
STRINGEMT108841e-151(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-29MIKC_MADS family protein