PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10885
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MIKC_MADS
Protein Properties Length: 190aa    MW: 21169.9 Da    PI: 6.0889
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10885genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.6e-161057146
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE..EEEE-TTSEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaeva..viifsstgkl 46
              kri ++  r vtf+kRr ++lKKA  L vLCd +v+  +++fsstgk+
  EMT10885 10 KRIVDDASRRVTFCKRRGTLLKKARGLAVLCDDDVSlgLVVFSSTGKV 57
              789999*************************99998446*******98 PP
2K-box32.73e-1288163577
     K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGed.L..esLslkeLqqLeqqLekslkkiRskKnellleqi 77 
               ++++++  ++++l  e+a+L++ei+ L+ ++R+  Ge+ L  +  +  eL+ L++++ ++l k+R +K +ll e++
  EMT10885  88 QDTNQDGDHHQQLLAEVARLRQEIDHLEGSLRRQTGEEdLlsSGVTAAELHDLQHHVGSALGKVRHRKVHLLEEEM 163
               556688899***************************75453345899*************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.984257IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-19264IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-10424IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-19489IPR002100Transcription factor, MADS-box
PfamPF003196.1E-151157IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-102439IPR002100Transcription factor, MADS-box
PfamPF014867.3E-1293163IPR002487Transcription factor, K-box
PROSITE profilePS512978.7697181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGRRGKLEVK RIVDDASRRV TFCKRRGTLL KKARGLAVLC DDDVSLGLVV FSSTGKVAGD  60
YCSPNTSWSD LIQRYEREST PSTQLQVQDT NQDGDHHQQL LAEVARLRQE IDHLEGSLRR  120
QTGEEDLLSS GVTAAELHDL QHHVGSALGK VRHRKVHLLE EEMLLATAAF LEVEVDMDME  180
ASTSLQPTLP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177037.11e-137MADS-box transcription factor 30-like
SwissprotQ655V41e-35MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLM8BB611e-135M8BB61_AEGTA; MADS-box transcription factor 30
STRINGEMT108851e-136(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.25e-26MIKC_MADS family protein