PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10895
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 185aa    MW: 20454.3 Da    PI: 5.3484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10895genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44.1e-162974555
              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
              h ++ErrRR++iN++f eL +++P++     kK++Ka+iL  Av+Y+++Lq
  EMT10895 29 HIIAERRRREKINQRFIELSTVIPNL-----KKMDKATILGDAVKYVRELQ 74
              899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.4312473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-132974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-202987IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.97E-142978No hitNo description
SuperFamilySSF474594.32E-182986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-173079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDDFMQWAMN TLDQQQYHAA SAAAAPPDHI IAERRRREKI NQRFIELSTV IPNLKKMDKA  60
TILGDAVKYV RELQDKVKTM EDDDSAAATT TTTIRSAVLV SKKIKADDDD DDEDAGESSH  120
GGLPEIEVRV SGEKTVLVRI HCKNARGLLV RVLAEVEELR LAITHTSVMP FPADTAIITI  180
TAKAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-172683663Transcription factor MYC2
5gnj_B8e-172683663Transcription factor MYC2
5gnj_E8e-172683663Transcription factor MYC2
5gnj_F8e-172683663Transcription factor MYC2
5gnj_G8e-172683663Transcription factor MYC2
5gnj_I8e-172683663Transcription factor MYC2
5gnj_M8e-172683663Transcription factor MYC2
5gnj_N8e-172683663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237ERRRRE
23338RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536590.0AK353659.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001O03.
GenBankAK3643450.0AK364345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2024A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190431.13e-92transcription factor NAI1-like
RefseqXP_020190432.13e-92transcription factor NAI1-like
TrEMBLM8BB701e-132M8BB70_AEGTA; Transcription factor bHLH25
STRINGEMT108951e-133(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-24bHLH family protein