PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10906
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 232aa    MW: 24978.9 Da    PI: 10.1693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10906genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.38e-17110144133
      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
               C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ k
  EMT10906 110 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANK 144
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101710.4175799IPR010402CCT domain
PfamPF062031.7E-105788IPR010402CCT domain
SMARTSM004016.3E-7104157IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-11106150No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14108146IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.63E-14109150No hitNo description
PfamPF003202.0E-14110144IPR000679Zinc finger, GATA-type
PROSITE patternPS003440110137IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTPNRLEDAQ SSKVQAVLLL LGTGEIPPGL SAMVLPSQRE NRGYEDLLQR TDIPAKRVAS  60
LIRFREKRKG RNFDKQIRYA VRKEVAHRVD AARHGWLEAR LGNIVVPMRC QNCGTSEKMT  120
PAMRRGPAGP RTLCNACGLM WANKFSVSPL LLPVVMEGTL RSCSKAKVEA PMPAIEQCNA  180
AVAQCQTGTD VKALPAPNNY GVAPSKGEAM DNSVTANVTA AATGGAPKAQ SE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547461e-107AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175747.11e-124GATA transcription factor 18-like isoform X4
SwissprotQ10F252e-81GAT18_ORYSJ; GATA transcription factor 18
TrEMBLM8BA771e-170M8BA77_AEGTA; GATA transcription factor 27
STRINGEMT109061e-171(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.28e-42ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]