PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10961
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 219aa    MW: 23923.6 Da    PI: 6.3985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10961genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-14140186455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h ++Er+RR++iN +f eL +++P +     kK++Ka+iL  Av+Y+k+ q
  EMT10961 140 EHVMAERKRREKINRRFIELSTVIPGL-----KKMDKATILSDAVRYVKEQQ 186
               699************************.....9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.796136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-12140186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17140195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.88E-16141190No hitNo description
SuperFamilySSF474591.7E-16141195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDDSNMFIQW AMETLEQEQD GAATGHVFPS SLLELDNSAA LQNGTHMAAH RHGATDSWSS  60
GDSGAAVAVE NDGWSSNCST NYPAASWNFI SAIPQPPSII EATPSPPAAP SHVVPELAHR  120
SPPSRKSSGA STGTVPTVQE HVMAERKRRE KINRRFIELS TVIPGLKKMD KATILSDAVR  180
YVKEQQEKLK ALQDRDARSI DSVVTFCEVK KDNNSNDRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149ERKRRE
2145150RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646672e-61AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171135.11e-148transcription factor bHLH18-like
TrEMBLM8BAB81e-162M8BAB8_AEGTA; Transcription factor bHLH19
STRINGEMT109611e-163(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-18bHLH family protein