PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11470
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 170aa    MW: 17819.9 Da    PI: 9.0282
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11470genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.1e-065173123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              y+C++C++ F++   L  H+++H
  EMT11470 51 YTCGYCKREFRSAQALGGHMNVH 73
              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-64978No hitNo description
PROSITE profilePS5015711.5315178IPR007087Zinc finger, C2H2
PfamPF139124.8E-75175IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MESRGSARGG DRGHLDHHRQ VLLLRPAAAW SYASAGGGAS CPAQRSPSSS YTCGYCKREF  60
RSAQALGGHM NVHRRERARI RHYYCSAYPA APAPAPAAVH RDWVPNLNFS PPRCPSGDYG  120
GTSTATPAVY SFFSTTAAAE AAKAALVVDL ELGVGGGGGG LDLELRLGCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5773651e-101AJ577365.1 Triticum aestivum partial mRNA for putative Zn-finger protein C2H2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165383.11e-120transcriptional regulator SUPERMAN-like
TrEMBLM8BCS01e-119M8BCS0_AEGTA; Transcriptional regulator SUPERMAN
STRINGEMT114701e-120(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.14e-15C2H2 family protein