PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11527
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 298aa    MW: 32380.9 Da    PI: 4.6559
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11527genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP40.57.3e-1334644777
              SSEEETTT--SS--S-STTTT-------S-- CS
       SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77
              s fh l+efDe+krsCr+rL++ n+rrr +q
  EMT11527 34 SGFHLLEEFDEAKRSCRKRLDERNRRRRTPQ 64
              67**************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114110.554163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.02E-93465IPR004333Transcription factor, SBP-box
PfamPF031106.9E-73562IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.3E-43550IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAVGRRCGSL GCGGGVSMEN EELGRDWGCG GLKSGFHLLE EFDEAKRSCR KRLDERNRRR  60
RTPQVVSKDS WSFMTTQQGL YSNGETSLAS FSAPRAEPSW SGIIKYDDSN PYYTHEVLSK  120
SRQNFTGSTS SDTMEGWHFP FLHEGDPMSF SAGAAALEIP VCQPLLMAVT PPPPESSSSI  180
VLSSDCVLSI LSSPANSSSM DITQMVRPSE QIPSVAQQCL VPDQQFSSSS WFACSQASSG  240
VCTAAGFAAL PSMDIEQLNT GAQVLSWNDN EMNCHGIFHV GADGYSEGTS PYFQFSWQ
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197530.10.0squamosa promoter-binding-like protein 18
SwissprotQ0J0K14e-56SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLM8B4540.0M8B454_AEGTA; Squamosa promoter-binding-like protein 18
STRINGEMT115270.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795