PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11716
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 902aa    MW: 100467 Da    PI: 7.9692
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11716genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP119.41.7e-37117192277
               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
               Cqv+gC+adls+ ++yhrrhkvCe h+k++ v ++++e+rfCqqCsrfh ++efDe+k+sCr+rLa+hn+rrrk+ 
  EMT11716 117 CQVDGCHADLSDDRDYHRRHKVCEPHTKSTLVRIKNIEHRFCQQCSRFHLVQEFDEGKKSCRSRLATHNRRRRKAP 192
               *************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-31109178IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.513114191IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.16E-35115194IPR004333Transcription factor, SBP-box
PfamPF031102.1E-28117190IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.0E-4624769IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.98E-5624769IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MSGGLKNKKK KGHEWDLNDW RWDGNLFLAT PSPNADAPSG CGSRELGRAE EGCSFGAAAD  60
KSRRRRRRRV TTVDNPEECS NTAIHNERNA VWRGQIGEEE GPASATAGAS SSSAPSCQVD  120
GCHADLSDDR DYHRRHKVCE PHTKSTLVRI KNIEHRFCQQ CSRFHLVQEF DEGKKSCRSR  180
LATHNRRRRK APAEAVNSLG ENQSLTNTLL LLLRQLAGQD SASSSEQING PNLLVSLLKN  240
LAAVAGTQAC QDMLKDATSS NAGNYVGNQS GPPVPAEEPP VKRRAQNFDL NDAYVEEDES  300
RTDKIVFKLF GKQPNDFPAD LRAQILNWLS HYPSDMESYI RPGCVILTIY PRLPNWMWDK  360
ILNWLSHYPS DMESYIRPGC VILTIYLRLP NWMWDKINVD PAPWIENLIS ISTHGFWETG  420
WLYARVQDRL TLSCNGRLML VSPWRPVIGD KHQILCVTPI AAAYNSTANF SVRGFNIAQP  480
TTKLLCIFGG KYLVQEATQK LHADTRIQQG PQCLTFSCSF PSTSGRGFIE VEDYDQSSIC  540
FPFVVAEESI CCEIRMLEEK LNIIAFGDAL EGREDLMASR SQALKFLHEI GWLLQRSHTR  600
ATSSKAPQQH HAVGFSAARF RWLLSFAVDQ EWCGVVKMLL DTLFQGNIDV ASPVDFVLGE  660
SLVFAAVNKR SKPLVACLLR YTTKSAPVGS GAVATPARFL FTPDMTGSSD ITPLHVAATI  720
TNAAAVLDAL TDDPQQLGIK TWKNARDATG YTPEDYARRR GHTSYIKMVE NKINSRLPAA  780
HVSVAMTTTG IAEKHTDDGR PRSTEQTVFD VEKSPPGCRQ CVQLQHIAYR PCPNRFLSNR  840
PAVLSLVAIA AVCVCVGLIM QSPPVIRGDQ DRYLVSGCRI GEREGEREYL QRLLEPSLWF  900
SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-25108190184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2520860.0AK252086.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf140n19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160962.10.0squamosa promoter-binding-like protein 1 isoform X2
SwissprotQ9LGU70.0SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBLM8BCN50.0M8BCN5_AEGTA; Squamosa promoter-binding-like protein 1
STRINGEMT117160.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.11e-162squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang H,Zhai J,Mo J,Li D,Song F
    Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance.
    J Integr Plant Biol, 2012. 54(9): p. 652-62
    [PMID:22889013]
  3. Zhang H, et al.
    Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
    Plant Cell Rep., 2014. 33(10): p. 1745-56
    [PMID:25113543]