PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11741
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 259aa    MW: 28307.6 Da    PI: 9.8708
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11741genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.97.9e-4030106177
               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
               +Cqve+C+adls ak+yhr hkvCe h+ka+ v ++g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk++
  EMT11741  30 RCQVEDCKADLSGAKHYHRCHKVCEYHAKAALVSAAGKQQRFCQQCSRFHLLTEFDEAKRSCRRRLAEHNRRRRKPA 106
               6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-322392IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.7728105IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-3729108IPR004333Transcription factor, SBP-box
PfamPF031101.7E-2931104IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLAVDRMLMR SRLGGVFGLG FGRAHHQAPR CQVEDCKADL SGAKHYHRCH KVCEYHAKAA  60
LVSAAGKQQR FCQQCSRFHL LTEFDEAKRS CRRRLAEHNR RRRKPAAGST TASSKDSAPP  120
SKKPNAGAIS SSYPADNNTL STTKSTISSN TSAISCLQQG QASEVAATRP TALTLGAAPE  180
KDNQQRQLRN AMQLHHHQEQ QHFITSLLRN NINNSNILSC SSVSSSTMPS AAAAANGEVS  240
DQNNDNANNS MHMFEVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-29311041184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187104KRSCRRRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478780.0KF447878.1 Triticum aestivum squamosa promoter-binding-like protein 20 (SPL20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146778.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT97e-76SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE87e-76SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLM8BCS30.0M8BCS3_AEGTA; Squamosa promoter-binding-like protein 10
STRINGEMT117410.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.17e-29squamosa promoter binding protein-like 8