PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11985
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 311aa    MW: 33647.6 Da    PI: 7.0181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11985genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09136183455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  EMT11985 136 SHSLAERVRRERISERMRLLQTLVPGC----DKVTGKALVLDEIINYVQSLQ 183
               8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.40E-10130187No hitNo description
SuperFamilySSF474591.44E-16130198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.358132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15132196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6136183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-9138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MADFSSAHHH SLLKMPEVFT TNDTSTPNIS SFLLYNQTSH GQSPAPANAC AAMVEDASRE  60
SSSAVLDNAS LQASASVDRK RKATDDSTTL SSAHSKDCKD GKSRRKREKS STEQDQEEAP  120
KGYIHVRARR GQATDSHSLA ERVRRERISE RMRLLQTLVP GCDKVTGKAL VLDEIINYVQ  180
SLQNQVEFLS MRIASMSPVL YGFGLDSDGL HDQAQKIGGM FQQEALAVPA PALNQASPAA  240
SQAMMDTTSY SLQGQGGISF SQSQSQWQLP DAISGRAKTG TAQSIGVQQH VLLPVGEEKE  300
MKQPILTIVS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2508100.0AK250810.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86g20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188652.10.0transcription factor bHLH137-like
SwissprotQ93W885e-53BH137_ARATH; Transcription factor bHLH137
TrEMBLM8BE710.0M8BE71_AEGTA; Transcription factor bHLH137
STRINGEMT119850.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.29e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]