PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT12034

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NAC

Protein Properties

Length: 253aa MW: 27591.6 Da PI: 9.1551

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT12034	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.2	6.3e-40	17	155	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 +pGfrF Pt++el+ +yL+++++g++ ++++vi+ vd+y+++P++L++ + ++ ++w+fF++r++++ +g r+ r+t sgyWkatg+ v+s+ EMT12034 17 TPGFRFYPTEDELLGFYLRHRLAGTTrPHVDRVIPVVDVYSHHPSHLRSmageASVQDAEQWFFFCPRAERELRGGRPARTTPSGYWKATGSPSCVFSSss 117 69*******************9995666678**********8434532223566*********************************9988 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+k+t+vfy+grap+g kt+W m+ey++ EMT12034 118 saaagNSKVIGVKRTMVFYQGRAPTGAKTTWKMNEYKA 155 888877788*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-43	12	185	IPR003441	NAC domain
PROSITE profile	PS51005	44.407	16	186	IPR003441	NAC domain
Pfam	PF02365	2.8E-22	18	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MTTTSSGGAG GDLLGSTPGF RFYPTEDELL GFYLRHRLAG TTRPHVDRVI PVVDVYSHHP 60 SHLRSMAGEA SVQDAEQWFF FCPRAERELR GGRPARTTPS GYWKATGSPS CVFSSSSSAA 120 AGNSKVIGVK RTMVFYQGRA PTGAKTTWKM NEYKAVAADD DTTTGHQTTA PLRLRNEFSV 180 CRLYISTGTL RSFDRRPLNT SGNGQAAPRR HAPSAANTAS IGQADNYQGW STLVTTSTTD 240 VDNFCFDMDF NQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-27	14	184	13	166	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185458.1	0.0	NAC domain-containing protein 90-like isoform X1
Swissprot	Q9FMR3	2e-68	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M8BYX6	0.0	M8BYX6_AEGTA; NAC domain-containing protein 90
STRING	EMT12034	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-63	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]