PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12036
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25654.7 Da    PI: 9.8871
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12036genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.54e-141150342
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              i n+s r+ t+ kR + ++KKA E+ +LC+a+++v+++++
  EMT12036 11 IRNDSARHNTLKKRSKNLMKKAGEVATLCNAKACVLVYGE 50
              89************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.8E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.713161IPR002100Transcription factor, MADS-box
CDDcd002666.22E-19285No hitNo description
PRINTSPR004044.2E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-18394IPR002100Transcription factor, MADS-box
PfamPF003194.7E-121150IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARKKVALRY IRNDSARHNT LKKRSKNLMK KAGEVATLCN AKACVLVYGE GAMVPEVFPS  60
HAEAVAILNR FKSMPEVARL KKTMDQESVL SQRVTKLRDQ VQKTRCELQD RETKFLLHEA  120
MVNGRLPGNI EELTTMGWKL ELMLKSLGER IAKMSGQPPV YQMQAPYIPD DMDMGLPTMY  180
RMPPQQQEGL LETVRSEGDL GTQIYNGHST GGHDGTNFGF FPSHRNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166784.11e-171agamous-like MADS-box protein AGL80
TrEMBLA0A453MRM61e-170A0A453MRM6_AEGTS; Uncharacterized protein
TrEMBLM8BDH41e-170M8BDH4_AEGTA; Agamous-like MADS-box protein AGL80
STRINGEMT120361e-171(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-23AGAMOUS-like 80