PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12307
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26231.9 Da    PI: 6.3154
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12307genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.21.1e-23959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              kri+nk  rq tf kRr g+lKKA+EL vLCda   v++fsstg+ly+y+s
  EMT12307  9 KRIDNKLSRQATFHKRRRGLLKKAQELAVLCDAHLGVLVFSSTGELYDYCS 59
              79***********************************************96 PP
2K-box48.24.6e-1780170796
     K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
               + ++  + ++l +++a+Lk+e + L  ++R + Ged+  s + +eL  Leq+Le +l k+R+ K+++l +q+ee+++k   l+e+n  +r+
  EMT12307  80 QGTNRDDDQKLLEDIARLKRERDHLVASHRMMTGEDMPcSTTKEELADLEQKLECALGKVREMKDKFLNQQLEESRHKVSILEEKNSLMRH 170
               3445666799***************************73556679****************************************997765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.044161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-28292IPR002100Transcription factor, MADS-box
CDDcd002651.81E-36280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-25323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-253859IPR002100Transcription factor, MADS-box
PfamPF014865.7E-1784170IPR002487Transcription factor, K-box
PROSITE profilePS5129711.39987180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGKVEMKR IDNKLSRQAT FHKRRRGLLK KAQELAVLCD AHLGVLVFSS TGELYDYCSP  60
HTSWSELIQR YKGITNAQLQ GTNRDDDQKL LEDIARLKRE RDHLVASHRM MTGEDMPCST  120
TKEELADLEQ KLECALGKVR EMKDKFLNQQ LEESRHKVSI LEEKNSLMRH VMNHDEQPRA  180
VVEAELMAPM MLPASAFGGF FPEAEEEGLS TSLQLWPQQL PDVQDPSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14185183MEF2C
5f28_B1e-14185183MEF2C
5f28_C1e-14185183MEF2C
5f28_D1e-14185183MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693123e-48KF469312.1 Brachypodium distachyon MADS-box transcription factor 17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191650.11e-171MADS-box protein ZMM17-like
TrEMBLM8B6E81e-169M8B6E8_AEGTA; MADS-box protein ZMM17
STRINGEMT123071e-170(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1951846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-38MIKC_MADS family protein