PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12329
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family Trihelix
Protein Properties Length: 851aa    MW: 94598.7 Da    PI: 8.9682
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12329genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.73.7e-19759839186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               +W+ +e++ Li++r em+e++++ k ++ lWee+s  + ++g++r+p qCk+ w +l ++y++ k+ e++      +t++yf+ ++
  EMT12329 759 KWKPEEIKSLIQLRGEMNEKFQTVKGRMVLWEEISGSLLKQGITRTPAQCKSVWTSLLQKYEESKKDEEN-----MRTWQYFSAMD 839
               7*****************************************************************9998.....479******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.102.6E-6679330IPR001279Metallo-beta-lactamase
SuperFamilySSF562812.22E-7280495IPR001279Metallo-beta-lactamase
SMARTSM008491.2E-2492289IPR001279Metallo-beta-lactamase
PfamPF127061.4E-10104239IPR001279Metallo-beta-lactamase
PfamPF075211.2E-6438467IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.084752816IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.8E-6754818IPR009057Homeodomain-like
SMARTSM007170.005756818IPR001005SANT/Myb domain
PfamPF138373.5E-16758840No hitNo description
CDDcd122031.68E-21758823No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0015979Biological Processphotosynthesis
GO:0045333Biological Processcellular respiration
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MVALASLSSL CLCGSARRRS ASAPTSISCC VLATPSGRGS HESRIPRRRF RRTEGATKSM  60
EDSVKRKMEQ FYEGVDGPPL RVLPIGGLGE IGMNCMLVGN YDRYILIDAG VMFPDYDEFG  120
VQKIIPDTTF IKKWSHKIEA VIITHGHEDH IGALPWVIPA LDSTTPIFAS SFTMELIKKR  180
LKEFGIFLSS RLKSFRVRNR FQAGPFEVEP IRVTHSIPDC CGLVLRCGDG TIFHTGDWKI  240
DESPVDGRIF DREALEELSK EGVTLMMSDS TNILSPGRST SESVVASSLL RHVSEAKGRR  300
VITTQFASNI HRIGSIKAAA DLTGRRLVFV GMSLRTYLEA AFRDGKAPLD PSTLVKAEDM  360
DAYDPKSLLV VTTGSQAEPR AALNLASYGG SHALKLSKED VLLYSAKVIP GNESRVMKML  420
NRLTDLGPKI VMGKDAGLHT SGHAYHDELE EVLQIVKPQH FLPVHGELLF LKEHELLGRS  480
TGIKHTTVIK NGEMLGVSHL RNRKVLSNGF VSLGKQDFKL MYSDGDKAFG TSTDLCIDER  540
FRIASDGIIF VSMEIFRPKP ASPQSGLKGK FKITTRCLWL DNGRLLDALY KAAHAALSSC  600
PLNCPLSHME RMVSEILRKM VRKYSGKRPD VIVVASENTT VGFSEEVINR HMSLVDYEKT  660
RPENPEREAE ESIPEVMRTT PDDATTSSNG ESFFSPDLHQ PKTLDHFWES FKSPTAVKIA  720
RIVNASAQGN KPKLGKISII DKDSSTSAPA PAKSSRKNKW KPEEIKSLIQ LRGEMNEKFQ  780
TVKGRMVLWE EISGSLLKQG ITRTPAQCKS VWTSLLQKYE ESKKDEENMR TWQYFSAMDS  840
FLSCEGEMAT K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A2e-848063719560RIBONUCLEASE J
5a0t_B2e-848063719560RIBONUCLEASE J
5a0v_A2e-848063719560RIBONUCLEASE J
5a0v_B2e-848063719560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496120.0AK249612.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47b03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191368.10.0uncharacterized protein LOC109777127
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A453NXB10.0A0A453NXB1_AEGTS; Uncharacterized protein
STRINGEMT123290.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49963542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]