PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT12426

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 417aa MW: 45169.9 Da PI: 9.7241

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT12426	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.5e-08	111	158	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h rEr RR+r+ ++++ +r llP+ +++ K +L Av+YI++L+ EMT12426 111 HITRERLRRERLSQGYADIRALLPPG---RAPNGAKNFVLAAAVDYIRELE 158 889********************8...89999999*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.204	106	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-10	110	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.5E-6	111	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-9	111	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.008	112	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MDEWFFSVDR DDDDDLLSLM GLLSPPPAVV HQGSAFAPYQ RRSTATSLLV SPGRRQRARG 60 RANAHRSMHE YLRRMNGLES SPQGTSSGAR AAPPAKEPIE PQVPRSSAFR HITRERLRRE 120 RLSQGYADIR ALLPPGRAPN GAKNFVLAAA VDYIRELEGR KGRLGARHAE LVRSSESDGA 180 SGGGMVVKVR GEGGCSSMVG ALEAVLRRLK AMQELRVTEI RSWCCDGAMC MDVAVAVEST 240 VSSFEVDMRI TNALMELEEI KSGRLQDAVK RSSNFSCQVV SGEAQTAPIL AVFGPLKQSF 300 HIIIRKNKPD KYCPLLIALA LSRKFSVMPS GSGAAGLSSS HDGGGMVVNV RGEGGCPSMA 360 GVLQAAVLRR LKAMQELRVT AIRSCSCDIV ICMDVRVEPT VSSFEVDMRI TNAFPAK

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MDEWFFSVDR DDDDDLLSLM GLLSPPPAVV HQGSAFAPYQ RRSTATSLLV SPGRRQRARG  60
RANAHRSMHE YLRRMNGLES SPQGTSSGAR AAPPAKEPIE PQVPRSSAFR HITRERLRRE  120
RLSQGYADIR ALLPPGRAPN GAKNFVLAAA VDYIRELEGR KGRLGARHAE LVRSSESDGA  180
SGGGMVVKVR GEGGCSSMVG ALEAVLRRLK AMQELRVTEI RSWCCDGAMC MDVAVAVEST  240
VSSFEVDMRI TNALMELEEI KSGRLQDAVK RSSNFSCQVV SGEAQTAPIL AVFGPLKQSF  300
HIIIRKNKPD KYCPLLIALA LSRKFSVMPS GSGAAGLSSS HDGGGMVVNV RGEGGCPSMA  360
GVLQAAVLRR LKAMQELRVT AIRSCSCDIV ICMDVRVEPT VSSFEVDMRI TNAFPAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	120	RLRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-135	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020170577.1	0.0	transcription factor BHLH148-like
TrEMBL	M8BEN4	0.0	M8BEN4_AEGTA; Uncharacterized protein
STRING	EMT12426	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12730	24	32