PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12832
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21506.5 Da    PI: 4.9334
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12832genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.62.5e-1113411442
              HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42
              s Rr  ++KKA EL ++Cd++ +v+++++
  EMT12832 13 STRRGSLMKKATELATMCDVKTCVVVYGE 41
              67*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0095153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-8741IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.2361341IPR002100Transcription factor, MADS-box
PfamPF003191.2E-81541IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MARKKVTLIA NDSTRRGSLM KKATELATMC DVKTCVVVYG EGLAEPKEAF LTQRIAKLRD  60
QVDRARRECQ DSEIRYLLYN IMHGNHPGLV DLSAEELARV GWKVDELLKS LGERMAKNHV  120
QAPPPAPCVS TDNIDMGSPP LYLASPQEEE VWLDTVSSGG DVGTQVYGGN ASHDTDVDFL  180
ELRLIDTLYP YPSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174675.15e-57agamous-like MADS-box protein AGL80
TrEMBLN1QV151e-142N1QV15_AEGTA; MADS-box transcription factor PHERES 2
STRINGEMT128321e-143(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.16e-12AGAMOUS-like 38