PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12833
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25395 Da    PI: 7.5802
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12833genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-131151343
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
              i  +s r   f kR+  ++KKA EL ++Cd++ +v++++++
  EMT12833 11 IAHDSTRRSRFKKRLRSLMKKATELATMCDVKTCVVVYGES 51
              6778888899*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.25151IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-12160IPR002100Transcription factor, MADS-box
CDDcd002661.26E-21285No hitNo description
SuperFamilySSF554551.31E-19395IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-6323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARKKVTLKY IAHDSTRRSR FKKRLRSLMK KATELATMCD VKTCVVVYGE SDAEPKVFPS  60
HAEAVDILNE FKSMPELGHC KKTMDQEAFL TQRIAKLRDQ VDKARRECQD SEIRYLLYNI  120
MHGNHPGLVD LSAEDVARVG WKVDELLKSL GERMAKNHVQ APPPAPSVST DSIDMASPSQ  180
YLTSPQQEEG WLDMVSSGGD VGTLVYGGNA SHDGAWPSPA TPAPASPALI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174656.11e-85agamous-like MADS-box protein AGL80
TrEMBLN1R2361e-172N1R236_AEGTA; Agamous-like MADS-box protein AGL80
STRINGEMT128331e-172(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-27AGAMOUS-like 80