PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13358
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 199aa    MW: 21423.5 Da    PI: 8.5388
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13358genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.35.3e-1515474678
              TSSEEETTT--SS--S-STTTT-------S--- CS
       SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
               s+fh l+efD++k+sCr+rLa+hn+rrrk+++
  EMT13358 15 SSQFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 47
              599***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.537145IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.7E-41532IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.55E-111648IPR004333Transcription factor, SBP-box
PfamPF031104.8E-81644IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAHACPRSSV DSTASSQFHL LDEFDDAKKS CRKRLADHNR RRRKSKPSEA DAADKRRTQA  60
SKAASTKGKA AGSSSKSTGT GDGMDIQVQL GSGDLSKNQD ETMGLGEVVK EMQVDPKGKA  120
SMQQQQGHHG HGLHLQSQHG FPFPSSSAGS CFPQSQAVSS THNTSNIGQV QQEQPGLGFH  180
QHSNILQLGQ AMFDLDFDH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13956RRRRKSKPSEADAADKRR
24045RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000269|PubMed:17594063}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478830.0KF447883.1 Triticum aestivum squamosa promoter-binding-like protein 8 (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192131.11e-128squamosa promoter-binding-like protein 8
SwissprotQ01KM71e-67SPL8_ORYSI; Squamosa promoter-binding-like protein 8
SwissprotQ7XPY11e-67SPL8_ORYSJ; Squamosa promoter-binding-like protein 8
TrEMBLN1R2G51e-142N1R2G5_AEGTA; Squamosa promoter-binding-like protein 8
STRINGEMT133581e-143(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-11squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]