PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13503
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family LBD
Protein Properties Length: 223aa    MW: 23921.1 Da    PI: 5.6428
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13503genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.71.3e-40521511100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +CaaCkvlrr+Ca++C+lapyfp ++p+kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq++ ++lk++la++++ 
  EMT13503  52 PCAACKVLRRRCADGCMLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKEANELKVDLARAQAD 151
               7**********************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.42551152IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-4052149IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDYSNEATIT AAAQPYGRSM SPPSRVSSCS PPPVFPLMGN APSSPPTIVL SPCAACKVLR  60
RRCADGCMLA PYFPPTEPAK FTTAHRVFGA SNIIKLLQDL PESSRADAVS SMVYEAEARL  120
RDPVYGCAGA VCRLQKEANE LKVDLARAQA DLLSIQTQHA NLLALVCVEF AANHRGDQQL  180
HQPPPLGDQL NGIGGSGGGA MYQPLYDSDF DSGAWEEARQ LWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-405115310112LOB family transfactor Ramosa2.1
5ly0_B3e-405115310112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9539371e-139EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150584.11e-165LOB domain-containing protein 1-like
SwissprotQ9LQR04e-60LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3B6JLK51e-164A0A3B6JLK5_WHEAT; Uncharacterized protein
TrEMBLR7W2Z91e-164R7W2Z9_AEGTA; Uncharacterized protein
STRINGEMT135031e-164(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-62LOB domain-containing protein 1