PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13902
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 435aa    MW: 47460.7 Da    PI: 10.4532
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13902genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.61.3e-1196130135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C +C++ +Tp+ R+gp g  tLCnaCG+ y k+g+
  EMT13902  96 CLHCKAVETPQRRSGPMGRGTLCNACGVWYSKNGT 130
               99******************************997 PP
2GATA32.71e-10188222135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C +Cg+++ plW +g+ g +++C aCG++y+k +l
  EMT13902 188 CLHCGSSEPPLWIEGSMGRREVCTACGMRYKKGRL 222
               99******************************986 PP
3GATA55.39.1e-18292326135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C++Cg+++Tp+WR+gp g  tLCnaCG++yr  +l
  EMT13902 292 CQHCGSSETPQWREGPKGRATLCNACGVRYRQGRL 326
               *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-890144IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.27590129IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.51E-1093132No hitNo description
Gene3DG3DSA:3.30.50.102.1E-1194136IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.33E-895140No hitNo description
PfamPF003201.2E-896130IPR000679Zinc finger, GATA-type
SMARTSM004018.4E-6182232IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.673182218IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.0E-8183220IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-7184222No hitNo description
PfamPF003202.6E-9188222IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-14284347No hitNo description
SMARTSM004012.9E-17286340IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.756286322IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-14290324IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.13E-12291338No hitNo description
PROSITE patternPS003440292317IPR000679Zinc finger, GATA-type
PfamPF003209.1E-16292326IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAARSPRSSS SSLSPQRRSP PSSPAWRPPS RGRRAATSPA TSRRPGGHSG SPSSSRCRRL  60
GDEEEGRRFP RPQRVQVAPS LDPGTADKPP KRLKRCLHCK AVETPQRRSG PMGRGTLCNA  120
CGVWYSKNGT LPEHRPVASP IVDSPLENPI WEPEVPGAIY LVRKSATERM PPRTEAAPAP  180
APRPGTSCLH CGSSEPPLWI EGSMGRREVC TACGMRYKKG RLLPECRPAE CSVTDSRQES  240
PVINSPPESP IWEPEVPSSV HLPRKPSKKK KRRRPRSEAP SAPWPANKGK RCQHCGSSET  300
PQWREGPKGR ATLCNACGVR YRQGRLLPEY RPVASPTFVP TKHANTHRKV LQLHRTRQSN  360
DEHPSPLPAD SVTNLPPIRN ELPTTSTAGL ATSEDPTDAP GYTDNPINVP SSLDSLLLDG  420
PSAPLIVESE DFAIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267272KKKKRR
2267273KKKKRRR
3268273KKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550520.0AK355052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152090.10.0uncharacterized protein LOC109737355 isoform X2
TrEMBLN1QVX80.0N1QVX8_AEGTA; GATA transcription factor 11
STRINGEMT139020.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-30GATA transcription factor 9