PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13975
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 256aa    MW: 27538.7 Da    PI: 5.6906
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13975genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1355.1e-4251391128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
               lppG+rF Pt+eel+++yL++k++g++ ++e+vi+ vd+y+v+P +L +          +  e + w++F+ r++++a+g r++r+t sgyWka g+   v
  EMT13975   5 LPPGYRFYPTEEELICFYLRNKLDGSRGDIERVIPVVDVYSVDPLQLSEiherlcgG--GggEGEPWFYFCARQEREARGGRPSRTTPSGYWKAAGTPGVV 103
               79****************************99***************8545655432..1436779*********************************** PP

       NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
               +s++++ +gl+kt+vfy+grap+g+kt+W m+eyr+
  EMT13975 104 YSADRRPIGLRKTMVFYRGRAPSGTKTKWKMNEYRA 139
               **********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-473180IPR003441NAC domain
PROSITE profilePS5100545.8835180IPR003441NAC domain
PfamPF023652.8E-236138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MADGLPPGYR FYPTEEELIC FYLRNKLDGS RGDIERVIPV VDVYSVDPLQ LSEIHERLCG  60
GGGGEGEPWF YFCARQEREA RGGRPSRTTP SGYWKAAGTP GVVYSADRRP IGLRKTMVFY  120
RGRAPSGTKT KWKMNEYRAF QHEHDGAGAP TATGGPHAAA PPNLPPQLRS EFSLCRLYTK  180
SGTLRQFDRR PVAAAAGGAA GDIPGPSTAA TASPDDGDGS GGSMHPLEED LMEGAGGDPY  240
GDDIATLAAL LYWPTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-28418616171NO APICAL MERISTEM PROTEIN
1ut4_B3e-28418616171NO APICAL MERISTEM PROTEIN
1ut7_A3e-28418616171NO APICAL MERISTEM PROTEIN
1ut7_B3e-28418616171NO APICAL MERISTEM PROTEIN
3swm_A3e-28418619174NAC domain-containing protein 19
3swm_B3e-28418619174NAC domain-containing protein 19
3swm_C3e-28418619174NAC domain-containing protein 19
3swm_D3e-28418619174NAC domain-containing protein 19
3swp_A3e-28418619174NAC domain-containing protein 19
3swp_B3e-28418619174NAC domain-containing protein 19
3swp_C3e-28418619174NAC domain-containing protein 19
3swp_D3e-28418619174NAC domain-containing protein 19
4dul_A3e-28418616171NAC domain-containing protein 19
4dul_B3e-28418616171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712741e-158AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158560.10.0NAC domain-containing protein 90-like
SwissprotQ9FMR33e-64NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A3B6GXD10.0A0A3B6GXD1_WHEAT; Uncharacterized protein
TrEMBLA0A453FZL70.0A0A453FZL7_AEGTS; Uncharacterized protein
TrEMBLR7W7490.0R7W749_AEGTA; NAC domain-containing protein 90
STRINGEMT139750.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-63NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]