PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT14500
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 178aa    MW: 18976 Da    PI: 6.5045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT14500genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000193052123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              y+C  C++ F++   L  H++ H
  EMT14500 30 YECVFCKRGFTTAQALGGHMNIH 52
              99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.3E-62856No hitNo description
PfamPF139122.1E-52953IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.993057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MESGSTAASS DEAVRSPGGT TAVAAARPYY ECVFCKRGFT TAQALGGHMN IHRRDRAKPA  60
RLTTSASRST ECNLAYPPAP PATSLMSSGD FAMLYYGRHT GAGVDAEAVS PGSPIPRELS  120
LFGADDDSHD DRDDCLQLGL RCHGSSSGDG FERRPDGELP ERKLDLELRL GPGPRPRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454779e-36AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149619e-36AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197841.11e-126zinc finger protein STAMENLESS 1-like
TrEMBLA0A3B6JNF21e-125A0A3B6JNF2_WHEAT; Uncharacterized protein
TrEMBLN1QZ901e-125N1QZ90_AEGTA; Transcriptional regulator SUPERMAN
STRINGEMT145001e-126(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-15C2H2 family protein