PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT14641

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 172aa MW: 18948.2 Da PI: 8.2329

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT14641	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	83	103	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C++ F+++ L H++ H EMT14641 83 CVYCDRKFRSSQALGGHQNAH 103 ******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.35E-10	72	126	No hit	No description
PROSITE profile	PS50157	11.032	81	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MSLRVKVGRE LGRYGLRAHQ EVPTVKLLSG ADECWCRDRR AEASHGQKDL NWEQDEQELS 60 LELTLRMTWA AEAEAEQGGF FLCVYCDRKF RSSQALGGHQ NAHKHERSVA KRRREIAAST 120 RAHGAGGAPA AAQDARPGGL ACMARKGGRA PSEYGYGAFE HAADEVDLSL RL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953775	1e-139	EU953775.1 Zea mays clone 1445807 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150431.1	6e-64	uncharacterized protein LOC109735630
Refseq	XP_020191320.1	6e-64	uncharacterized protein LOC109777076
TrEMBL	N1QX56	1e-121	N1QX56_AEGTA; Zinc finger protein 2
STRING	EMT14641	1e-122	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	3e-13	C2H2 family protein