PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT14878
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 27987.7 Da    PI: 5.3999
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT14878genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.33.5e-17960150
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS..EEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg..klyeys 50
              k+i+n+  r  tf kRr g+lKKA+EL vLC+++  +++f  +g  kl++y+
  EMT14878  9 KKIQNDVSRRATFGKRRRGLLKKAHELAVLCGVDLGLLVFDDDGagKLFDYC 60
              689*************************************998522677775 PP
2K-box39.22.9e-1489178896
     K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
               + ++++++ +   +a L++e + L+ +  +  Ge+L+s  +  eL +Leq+Le  l k+R++K++ll +q+ e+ +k + l+++n  Lr+
  EMT14878  89 HHDDHQQQPSADIIAGLRREGDHLEASVTRQTGENLSSTaTAAELDELEQRLECVLGKVRETKDKLLEQQLGESHHKVHILEDQNSFLRR 178
               4566677777788999*********99999******9862679*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-24162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.679152IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-23281IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-16323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-181059IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-163859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1493178IPR002487Transcription factor, K-box
PROSITE profilePS5129710.18395188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRGRTEMKK IQNDVSRRAT FGKRRRGLLK KAHELAVLCG VDLGLLVFDD DGAGKLFDYC  60
APNTSWSELI ERYESITKHQ FQFQGQGIHH DDHQQQPSAD IIAGLRREGD HLEASVTRQT  120
GENLSSTATA AELDELEQRL ECVLGKVRET KDKLLEQQLG ESHHKVHILE DQNSFLRRLV  180
IVNDIAACLL SCYVYWLPEC VFTLCQMGEE GQQRAAVEAS AVPPKLPEVE EEELTTLRLW  240
PRQLPDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-72HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153391.11e-138MADS-box transcription factor 29-like
TrEMBLR7W4V20.0R7W4V2_AEGTA; MADS-box transcription factor 29
STRINGEMT148780.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1951846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-17MIKC_MADS family protein