PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT14910
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family Whirly
Protein Properties Length: 219aa    MW: 25027.7 Da    PI: 9.8448
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT14910genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly361.3e-1126602256
    Whirly 22 dsgnlklkraGglllelanataerkydWekkqsfa 56
              +sg+ k+ ++G++ll++a+a+++r+ydW +kq   
  EMT14910 26 QSGAYKVAKEGFVLLQFAPAVGPRQYDWTRKQLPK 60
              589****************************9654 PP
2Whirly112.43.3e-359618253139
    Whirly  53 qsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
               ++f+ls+ e+++l+ l+  +sceffhdp+++ s+eGkvrk+lkveP pdG G f+nlsv+n l++++e++++P++k+e+av+ s ++
  EMT14910  96 DVFSLSVWEMGTLLTLGLTDSCEFFHDPFKGRSDEGKVRKVLKVEPTPDGNGRFFNLSVQNRLLNVDENIYIPITKGEYAVIVSTFN 182
               58********************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.109.0E-122260IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.84E-82679IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.1E-102662IPR013742Plant transcription factor
SuperFamilySSF544471.41E-4597219IPR009044ssDNA-binding transcriptional regulator
PfamPF085367.0E-3297179IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.101.0E-4497204IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGFSIDGPGR GLGFLPRALL GPAYGQSGAY KVAKEGFVLL QFAPAVGPRQ YDWTRKQLPK  60
TSVYARLNSM VWFRQKEKKT YITLKNEFQA KIYIVDVFSL SVWEMGTLLT LGLTDSCEFF  120
HDPFKGRSDE GKVRKVLKVE PTPDGNGRFF NLSVQNRLLN VDENIYIPIT KGEYAVIVST  180
FNYIIPHIMG WSTFTNSIKP EESQPYNRPQ SSPELEWRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A2e-68121740218p24: plant transcriptional regulator PBF-2
1l3a_B2e-68121740218p24: plant transcriptional regulator PBF-2
1l3a_C2e-68121740218p24: plant transcriptional regulator PBF-2
1l3a_D2e-68121740218p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA and RNA binding protein that maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. Functions in RNA metabolism and is involved in the maturation of the atpF and 23S ribosomal RNAs. {ECO:0000269|PubMed:18676978, ECO:0000269|PubMed:19666500}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3537951e-171AK353795.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002M22.
GenBankAK3654521e-171AK365452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034E15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186783.11e-104single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotB2LXS77e-92WHY1_MAIZE; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLR7W8E91e-161R7W8E9_AEGTA; Uncharacterized protein
STRINGEMT149101e-162(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.24e-73ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]