PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT15029
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 91aa    MW: 9709.01 Da    PI: 9.8635
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT15029genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind71.22e-221471360
                  HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  3 lkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  + k+y+++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+Y
      EMT15029 14 VWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTMLPAHFKHNNFSSFVRQLNTY 71
                  569******************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.6E-15988IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-121336IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.8E-241478IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-211472IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-181671IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-125163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-126476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAAASVGGGG APGVWKTYRM VEDPGTDGVI GWGKGNNSFV VADPFVFSQT MLPAHFKHNN  60
FSSFVRQLNT YVSQLIPTRS VGSVVNSFSI I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-161471562Putative transcription factor
5d5x_B1e-161471562Putative transcription factor
5d5x_E1e-161471562Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2346531e-104KF234653.1 Triticum aestivum heat shock factor C2a (HsfC2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641665.11e-37heat stress transcription factor C-2b
SwissprotQ0DBL61e-38HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLR7WAD21e-59R7WAD2_AEGTA; Uncharacterized protein
STRINGEMT150292e-60(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-24heat shock transcription factor C1