PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT15172
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 409aa    MW: 44091.6 Da    PI: 9.7556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT15172genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.8e-13205251455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h  +Er+RR++ N++f eL  ++P +     kK++K +iL  A++Y+k+Lq
  EMT15172 205 DHIRAERKRREKTNQRFIELSAVIPGL-----KKMDKGTILSNATRYVKQLQ 251
               58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.373201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10205251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-16205258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-14206260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-12206255No hitNo description
SMARTSM003531.9E-13207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAAGSGGMRD VQAGVNLSSE GSSRRKEALA EYTLLPSLVL ASGSVATYGR MLMDDMDDSL  60
LFMQWAVSTL QHEEAQGGAD ENRAGSSCLQ ALRDSSEPAE AQDRQSSGAD TRHRGGLISP  120
SPDAAMQQGS NSTFTSFPAS GGMSSTGATN THSATNTHSM SWNFNAAQPS SVGGGTQAAR  180
APLRSGVSQP TRRAAARKVG ACAQDHIRAE RKRREKTNQR FIELSAVIPG LKKMDKGTIL  240
SNATRYVKQL QEKVKSLEVA GGSHRSVETV VLVREPSRHT APNSNEGSSL FYSAAQTPAS  300
SQRLPEIEAK LSENKVMLRI LCEINGKGVV ARVLAELEEF HLCIVHNNVM PFTESTVIIT  360
TMAKASFHHY FYDGTLKRGR GICVILSRRI ESSKFIRDAR PKPHNGMID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214ERKRRE
2210215RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659952e-35AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163456.10.0transcription factor NAI1-like
TrEMBLR7W4460.0R7W446_AEGTA; Transcription factor bHLH25
STRINGEMT151720.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-36bHLH family protein