PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT15399
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 188aa    MW: 19731 Da    PI: 5.0644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT15399genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10123152231
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
       HLH   2 rrahnerErrRRdriNsafeeLrellPkas 31 
               r++h ++Er+RR+++N+ ++ Lr+l+P+++
  EMT15399 123 RMTHIAVERNRRKQMNEYLAALRSLMPPSY 152
               99*************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.14E-10114181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-8120152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.915121179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-8123152No hitNo description
PfamPF000105.3E-8123152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MALEAAVLSR AAAGLFGRCA MAGAGGAWNG LFGGSEGLAG LDGGDWDAAV AAACSSMLLP  60
PAAFQDLDIS ATAPQEESGG RGEMSAAGVG QHDAAPVTAA ATGRRKRRRT RTAKNSEEGE  120
SHRMTHIAVE RNRRKQMNEY LAALRSLMPP SYALRVEDDC QLTSVDEIAT AAHQIIEKIQ  180
EEQDFTSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108RKRRR
2104109RKRRRT
3122133RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053991e-56AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02.
GenBankAP0055741e-56AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08.
GenBankAP0149651e-56AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-56CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148028.14e-91transcription factor bHLH94-like
TrEMBLN1R3931e-134N1R393_AEGTA; Transcription factor FAMA
STRINGEMT153991e-134(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-17bHLH family protein