PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT15405

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NAC

Protein Properties

Length: 248aa MW: 27947.2 Da PI: 5.9427

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT15405	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.6	2.5e-32	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 lppGf+F P+deelv ++L++k++ +++ ++++++ ++++Pw+L+ k+ + ++wyfFs++ + +r++r +g W+ g d++v s +g++vg EMT15405 7 LPPGFHFFPSDEELVIHFLRRKAALLPCRP-DIVPTLPQNRYDPWELNGKALQAGNQWYFFSQATQ-----SRTSR---NGCWNPIGADEAVSS-GGSHVG 97 79***********************999.89**********966667789**9754.....35555...7*********9.999* PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkktLvf g+ +++kt+Wvmhey+l EMT15405 98 LKKTLVFSIGEPFQATKTNWVMHEYHL 124 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-43	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	39.798	7	163	IPR003441	NAC domain
Pfam	PF02365	4.6E-22	8	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGGSTNLPPG FHFFPSDEEL VIHFLRRKAA LLPCRPDIVP TLPQNRYDPW ELNGKALQAG 60 NQWYFFSQAT QSRTSRNGCW NPIGADEAVS SGGSHVGLKK TLVFSIGEPF QATKTNWVMH 120 EYHLLDGNGG TSSSGSSRKR SHKKKDHPDK ECSNWVVCRV FESSYDSQVS FHEEDMELSC 180 LDEVFLSLDD YDEQRPNGVS QMLLDHKDKK KEHGWNLCKH IAIDVINEIS SKSSSNDFPI 240 DAILEEGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-33	6	168	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-33	6	168	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-33	6	168	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-33	6	168	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	6	168	19	173	NAC domain-containing protein 19
3swm_B	2e-33	6	168	19	173	NAC domain-containing protein 19
3swm_C	2e-33	6	168	19	173	NAC domain-containing protein 19
3swm_D	2e-33	6	168	19	173	NAC domain-containing protein 19
3swp_A	2e-33	6	168	19	173	NAC domain-containing protein 19
3swp_B	2e-33	6	168	19	173	NAC domain-containing protein 19
3swp_C	2e-33	6	168	19	173	NAC domain-containing protein 19
3swp_D	2e-33	6	168	19	173	NAC domain-containing protein 19
4dul_A	2e-33	6	168	16	170	NAC domain-containing protein 19
4dul_B	2e-33	6	168	16	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR819767	0.0	FR819767.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC026 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165263.1	1e-144	NAC domain-containing protein 104 isoform X1
Swissprot	Q8GWK6	8e-58	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	N1QY68	0.0	N1QY68_AEGTA; NAC domain-containing protein 29
STRING	EMT15405	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-59	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]