PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT15491
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family Whirly
Protein Properties Length: 352aa    MW: 38233.8 Da    PI: 10.3642
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT15491genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly111.28.1e-3570153285
    Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgs 85 
               v+k+kaal++ +++p f++++sg  +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s
  EMT15491  70 VFKGKAALSISPILPLFTKVESGGSRVDRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSS 153
               9********************************************************************************998 PP
2Whirly22.61.7e-07162191108139
    Whirly 108 nlsvtnslvkgnesfsvPvskaefavlrsllv 139
               +l  ++s+ k+ne++svPv+kaefav+r++l+
  EMT15491 162 SL--STSVSKTNERLSVPVTKAEFAVMRTALS 191
               44..45666********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.7E-4658191IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.8E-4263193IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.1E-4070188IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000394Biological ProcessRNA splicing, via endonucleolytic cleavage and ligation
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009086Biological Processmethionine biosynthetic process
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MLRLSRFLPS TSRGVTDLKD VLWSGSLTFK HALSTSAANV DARYMLQSLT ARTSLSAENA  60
SVKKYASYTV FKGKAALSIS PILPLFTKVE SGGSRVDRNG SVMLTFFPAV GQRKYDYTKK  120
QLFALSPTEV GSLISLGPAE SCEFFHDPSM KSSTLYRAII FSLSTSVSKT NERLSVPVTK  180
AEFAVMRTAL SKFIISLHCR TSWVGTRPYR LTLKAPRPQL ASLGSSSQIQ LRSGTALLEQ  240
PTNTIPHIPL TRHYTEGLWG DEIHKNLSDV LGGPSRRKEP QRTGTGHTQR VGYNPAETNP  300
CSVIIPDTTF LSSTTGRNCT GEGGDSIFSM ASTAIASAVI VLGFLKDVKH AC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A5e-49571914154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B5e-49571914154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C5e-49571914154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D5e-49571914154Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499761e-121AK249976.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf60h16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180430.11e-101single-stranded DNA-bindig protein WHY2, mitochondrial
TrEMBLN1QWI40.0N1QWI4_AEGTA; Uncharacterized protein
STRINGEMT154910.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-50WHIRLY 2