PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT15779

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NF-YA

Protein Properties

Length: 261aa MW: 28594.7 Da PI: 9.982

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT15779	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.7	1.6e-32	157	213	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF EMT15779 157 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 213 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-35	155	216	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.934	156	216	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-26	158	213	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-23	159	181	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	161	181	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.3E-23	190	213	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MAAWGCKQQQ LNSKKSSKER KRLRRGCWVH LLERGCRREV ESGRRRQSNP GGSGGDGVFN 60 CDHRADEQQK QAAAQGNQEE APATSIGSQA MVATPSTDYV TPYGHQEACH AMGQIAYPTV 120 DPFYGSLYAA YGGQPMMHPP MVGMHAAAIP LPTDAIEEPV YVNAKQYNAI LRRRQSRAKA 180 ESERKLIKGR KPYLHESRHQ HALKRARGAG GRFLNAKSDD NEEHSDSSSK DKQNGVAPRS 240 SGQSSQSPKG ATSADKSANH E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-21	156	229	1	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009624	0.0	BT009624.1 Triticum aestivum clone wre1n.pk0143.h2:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186181.1	1e-147	nuclear transcription factor Y subunit A-7-like isoform X2
Refseq	XP_020186182.1	1e-147	nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q84JP1	6e-42	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	N1R0Y8	0.0	N1R0Y8_AEGTA; Nuclear transcription factor Y subunit A-7
STRING	EMT15779	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-38	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]