PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16023
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 238aa    MW: 25881.9 Da    PI: 9.8599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16023genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.4e-135298455
              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               h ++ErrRR++iN+++ eL +l+P       kK++Ka+i   A +++++Lq
  EMT16023 52 DHTIAERRRREKINQRLMELSTLIPGI-----KKMNKATIIGDALKHVRELQ 98
              59***********************97.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8564897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-105298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1652111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-1653113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-1353102No hitNo description
SMARTSM003531.3E-1354103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MPMSSKSVAA LTQSAAIGAH KHAGGRRSGS SLQGSAMSAA SASSTCPDPA KDHTIAERRR  60
REKINQRLME LSTLIPGIKK MNKATIIGDA LKHVRELQEK VKILENNNRH AATTTISSTV  120
FVHKNRPFLS GLTSNYRDDD AGEPSHLGTW LPEIKVRLSD KIVLVQIHCE NTNGLLVRVL  180
GEVEVLRLAI THTSSMPFLA DTTIINITAK ASCTQTVIFC TAKMLCIIDA CSYFPHVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661ERRRRE
25762RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174829.11e-151transcription factor bHLH18-like
TrEMBLN1QYD81e-176N1QYD8_AEGTA; Transcription factor bHLH25
STRINGEMT160231e-176(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-27bHLH family protein