PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16026
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26320.3 Da    PI: 7.8714
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16026genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.4e-141548841
              HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
    SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifs 41
               r   f kR++g++KKA EL vLCda+ +v+++ 
  EMT16026 15 TRRKRFKKRLKGLMKKADELAVLCDAKTCVLVYE 48
              455579**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.456149IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-7159IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-16494IPR002100Transcription factor, MADS-box
PfamPF003192.4E-131349IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-52237IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-53758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRNVTLQYT PHDSTRRKRF KKRLKGLMKK ADELAVLCDA KTCVLVYEEG KAAPEVFPSQ  60
AEAVGILNRF KSIPELWRCE EVMNQKGFIT KRIDKLREQV DKTRRECEDG EIRSLLHKTM  120
HGDLSGLVGL NIEDLTKVGY KVDMLLKSIT ERKEKIHSQA PPPAPCVATG SIDMGSPPLY  180
PAPPQQESRL DMVSSGGDLD TLVYGGYAGA NFSSSDTMMQ MQSFDMDFGS SPFPPM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174675.11e-176agamous-like MADS-box protein AGL80
TrEMBLN1R1681e-176N1R168_AEGTA; MADS-box transcription factor PHERES 2
STRINGEMT160261e-176(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-19AGAMOUS-like 80