PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT16225

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

G2-like

Protein Properties

Length: 293aa MW: 32636.9 Da PI: 6.3175

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT16225	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.1	8.4e-33	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp+LH+rFv+av++LGG++kAtPk +l+lm +kgLtl+h+kSHLQkYRl EMT16225 26 KQRLRWTPDLHDRFVHAVARLGGPDKATPKGVLRLMAMKGLTLYHLKSHLQKYRL 80 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-31	23	81	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.335	23	83	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-16	26	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-24	26	81	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-7	28	79	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-19	147	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MEGMSYGGGA AGAGAGAAAL SPRDPKQRLR WTPDLHDRFV HAVARLGGPD KATPKGVLRL 60 MAMKGLTLYH LKSHLQKYRL GKQSKKSTDL ELANSGDFTT QDINFQIGAP LVVPAERDTG 120 RADLSAIIRH LEINNNYFCL HGLEIPLEDT LRYQIQVQRE LCEQLEVQKK LQMRIEAQGR 180 YLKEILEKAQ ENISFDANGS VGLENTRSQL TDFNLALPGL SDNGTQVYEE SGEQLVKHMS 240 DDNLHDNNLD FQLYRVRSQE AKSVECTPKT EDLLLLDLNI KGGYDLSSRG MQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-21	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371512	1e-158	AK371512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2136B23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164352.1	0.0	myb family transcription factor PHL11-like
TrEMBL	N1QYN5	0.0	N1QYN5_AEGTA; Myb family transcription factor APL
STRING	EMT16225	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-59	G2-like family protein