PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16792
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 268aa    MW: 29875.9 Da    PI: 6.319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16792genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-0880122754
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               + E++RR+r+ ++f  L  l+P++     +K + a++   A+eYI++L
  EMT16792  80 KKEKQRRQRLSEKFTALMLLIPNR-----TKEDRATVIYDAIEYIQEL 122
               57*********************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.35773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-679128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-680122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-982131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-1082142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-782122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MYHQQCELLM PHEDLDMDAG QSHHLAAASA VPAELNFHLL SYVDAAVSPQ QPTVEYFFGG  60
ADQPHAHSFH GFPANGGVEK KEKQRRQRLS EKFTALMLLI PNRTKEDRAT VIYDAIEYIQ  120
ELGRTVEELT LLVEKKRGRR EHQGDVVDPA PLVVAGEGEC SAGELRAPPP PPPQPIRSTY  180
IQRRSKETFV DVRIVEDEVN IKLTKRRRDG CLAAASRALD DLHLDLVHLS GGKIGDCHIY  240
MFNTKIHPGS PVFASAVASK LIEVVDEY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175517.11e-131transcription factor TIP2-like
SwissprotQ5JNS01e-103TIP2_ORYSJ; Transcription factor TIP2
TrEMBLR7W6870.0R7W687_AEGTA; Transcription factor bHLH91
STRINGEMT167920.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.24e-36bHLH family protein