PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17291
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family DBB
Protein Properties Length: 218aa    MW: 24095.5 Da    PI: 6.578
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17291genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.9e-07333434
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
              ++C+ +e+  + lfC  ++  lC+ C ++ H
  EMT17291  3 TICDVCESAVAVLFCAADEAALCRPCDEKVH 33
              68**************************998 PP
2zf-B_box253.9e-085291237
  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
              +  +C+ +e+ ++ ++C  +++ lC +C ++ H g    H
  EMT17291 52 KLIRCDICESSPAFFYCDIDGTSLCLSCDMAVHVGgkrtH 91
              6679****************************96655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.1E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
CDDcd000211.08E-7345No hitNo description
PfamPF006433.0E-5341IPR000315B-box-type zinc finger
SMARTSM003364.8E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501199.5995196IPR000315B-box-type zinc finger
PfamPF006435.6E-65291IPR000315B-box-type zinc finger
CDDcd000211.77E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRTICDVCES AVAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLIRCDICE  60
SSPAFFYCDI DGTSLCLSCD MAVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVAMQQMD  120
SENPRDQNNA HSVPKEQMVN HHHNAYDPAS DGNCNGQGAI DSKMFDLNMR PARNNGQGSS  180
SQGLYKEIID LSFCVLELLY MATAVNVRTK MLKGVLLT
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741330.0AK374133.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3055F19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148445.11e-134B-box zinc finger protein 18-like
SwissprotC0SVM57e-68BBX19_ARATH; B-box zinc finger protein 19
TrEMBLR7W7641e-162R7W764_AEGTA; Putative salt tolerance-like protein
STRINGEMT172911e-162(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-70DBB family protein