PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17387
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 294aa    MW: 33519.2 Da    PI: 8.0458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17387genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-14581371599
               -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                + +p+kf+ ++  g+   + ++ l  ++g+ ++v++  +k+ ++ ++++GW eF++  +L +gD+++F+ +g+s+f   v++f++
  EMT17387  58 FVDVPRKFLVNNmRGQ--IPDEVNLDLPNGKAYTVQV--SKQENGLIFQSGWAEFARTYELVQGDILLFESSGSSCF--EVRIFNQ 137
               5679*****9996444..6678***************..*******************************9998999..8888875 PP
2B365.29.8e-21210292998
               HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ++k + l++pk+fa++  gk   s +++le ++g++++v++  +k ++++vl++GW  Fv+a +LkegD+++F ++g+s    +v++f+
  EMT17387 210 RASK-NELTIPKEFANNVRGK--ISDEIKLEVPDGQTYRVQV--DKEPNEVVLRSGWDAFVSAYELKEGDTLLFAYTGNSHL--KVQIFN 292
               4444.56********888777..6779***************..********************************997777..999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.18E-1648136No hitNo description
SuperFamilySSF1019365.69E-1748140IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1748140IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-1050138IPR003340B3 DNA binding domain
PfamPF023622.0E-1257137IPR003340B3 DNA binding domain
PROSITE profilePS5086311.01161138IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-22197292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.944201294IPR003340B3 DNA binding domain
CDDcd100171.34E-20201292No hitNo description
Gene3DG3DSA:2.40.330.101.1E-22201292IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-12202294IPR003340B3 DNA binding domain
PfamPF023621.7E-18205292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MPYGGTRRSA RVDPAWSGGC GQRMQTSLAR CNECVVYHNW HCKGDWKKRF VKIVTGDFVD  60
VPRKFLVNNM RGQIPDEVNL DLPNGKAYTV QVSKQENGLI FQSGWAEFAR TYELVQGDIL  120
LFESSGSSCF EVRIFNQTGC EKELSCVAMK NTPCLNEKSM PHDNDMQSPK NERCGNMSGK  180
SHTICKVCAA FYYWHHMDKM RFFMVMMGVR ASKNELTIPK EFANNVRGKI SDEIKLEVPD  240
GQTYRVQVDK EPNEVVLRSG WDAFVSAYEL KEGDTLLFAY TGNSHLKVQI FNDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161799.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
SwissprotQ2QMT73e-71Y1214_ORYSJ; B3 domain-containing protein Os12g0591400
TrEMBLN1R0L00.0N1R0L0_AEGTA; B3 domain-containing protein
STRINGEMT173870.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-13B3 family protein