PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17586
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 258aa    MW: 28268 Da    PI: 7.8898
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17586genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21.1e-131053245
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               i n s r+ tf kR  g+ KKA ELS+LC+++v+ +++ ++g+
  EMT17586 10 YIANGSARKATFKKRGIGMKKKARELSTLCGVDVCYVMYYPEGE 53
              58999*********************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-11160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.208153IPR002100Transcription factor, MADS-box
CDDcd002669.93E-24285No hitNo description
PRINTSPR004041.8E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-19497IPR002100Transcription factor, MADS-box
PfamPF003194.5E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAPKKVNMEY IANGSARKAT FKKRGIGMKK KARELSTLCG VDVCYVMYYP EGESSQVPEV  60
YPSVPEAMRV IDRFRSTPEL DRCKKKIGGE DYIRERISKL QEQLSKARRD THLLETKVLL  120
HDVLAGHRQS LAGLNIEQLA SLGWMADNYI KKVGDCIASN KSRKHAGPLP CDATAANVNA  180
EGPPLQGWAT EVVKAGPDVD GAAYGGNADG DVTQISNLAV GFAWADPGHF LDIEANGRYS  240
FDHYPEQQAY PAAASREP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151325.10.0agamous-like MADS-box protein AGL80
TrEMBLN1R0C70.0N1R0C7_AEGTA; Agamous-like MADS-box protein AGL80
STRINGEMT175860.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-31AGAMOUS-like 80