PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17960
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 173aa    MW: 18802.3 Da    PI: 10.122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17960genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0016284123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C+ Cg+ F +   L  H  +H
  EMT17960 62 FVCKTCGRAFETFRALGGHRTSH 84
              89*********999988887776 PP
2zf-C2H213.60.0002113135123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               + C++Cg  F +   L  H+r+H
  EMT17960 113 HDCHICGLGFETGQALGGHMRRH 135
               56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.98E-762135No hitNo description
PfamPF139123.7E-86286IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3886289IPR007087Zinc finger, C2H2
SMARTSM003550.416284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
PfamPF139124.1E-10113138IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702113140IPR007087Zinc finger, C2H2
SMARTSM003550.22113135IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGVGMKRARE EEPVVSLALS LSTDSSATST TTSDSSTGAP AMVPRKRARR GRAVATSGEG  60
EFVCKTCGRA FETFRALGGH RTSHLRGRHG LELGVGVARV IKERKRQEDK QRHDCHICGL  120
GFETGQALGG HMRRHREEMA LSGSVDRWVA LSDQEAGHQA AVDWPPVLLQ LFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696831e-136AK369683.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095K21.
GenBankAK3721981e-136AK372198.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P16.
GenBankEU8125631e-136EU812563.1 Hordeum vulgare subsp. vulgare Rpg4 gene, complete sequence; RGA1 (RGA1) gene, complete cds; Rpg5 gene, complete sequence; PP2C (PP2C) gene, complete cds; and ADF3 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198412.11e-123zinc finger protein ZAT4-like
TrEMBLA0A453M9I01e-122A0A453M9I0_AEGTS; Uncharacterized protein
STRINGEMT179601e-122(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.14e-20C2H2 family protein