PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT18059

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

LBD

Protein Properties

Length: 223aa MW: 23136.3 Da PI: 9.0888

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT18059	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.3	1.2e-19	32	105	24	97
DUF260 24 aeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 ++q +++ +++k+FG++ ++++l+a+pe++r+++++sl+yeA r+ +Pv+Gavg++++++++l++++++++l+ EMT18059 32 DAQGHATLFAAKFFGRAGLMSFLTAVPEQQRPAVFQSLLYEAAGRTINPVSGAVGLLWAGSWHLCEAAVQTVLR 105 4668999************************************************************9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.536	1	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-16	26	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MPLATCTTPC ATALWTADMR RGAVRRREKA ADAQGHATLF AAKFFGRAGL MSFLTAVPEQ 60 QRPAVFQSLL YEAAGRTINP VSGAVGLLWA GSWHLCEAAV QTVLRGGAIR PLPELAGGVP 120 EGGVGGSDLF VSSSRRAVVG CSTYSAAKRV TPRKTWAPEA ASHHQEPSCD LGLFLTPGSA 180 AAAEGERRAR RAGTPSMSSD GSVTTSAGAG AGEKEPELLN LFV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363859	0.0	AK363859.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019I02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191646.1	1e-135	LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-45	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	R7WEM1	1e-158	R7WEM1_AEGTA; Uncharacterized protein
STRING	EMT18059	1e-159	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	6e-44	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]