PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18143
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family TCP
Protein Properties Length: 236aa    MW: 25649.9 Da    PI: 5.3834
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18143genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.11.5e-34105182378
       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaess 78 
                ++drhski T++g RdRR+Rls+ +a++fF+Lqd LGfdk+skt+eWLl+q+kpai+ l++ ++  a ++   ++++
  EMT18143 105 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDLLGFDKASKTVEWLLTQSKPAIDRLADATQGGAAAAaaGPSKE 182
               689************************************************************666663332222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.543106164IPR017887Transcription factor TCP subgroup
PfamPF036348.5E-34106183IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTQPSTVIIT IIIIEYPTKN RQYQTLLPIG RHMHPAASSF GEYFQFFPAE MYHHQQLLLQ  60
EEGTLEAVLW QPVTAPAPAE RGEPGNNGAP GPGGAVVGAA RKRPFRTDRH SKIRTAQGVR  120
DRRMRLSVGV AREFFALQDL LGFDKASKTV EWLLTQSKPA IDRLADATQG GAAAAAAGPS  180
KEKGEGATSS GTGFFEDARE EEQDVRDLMK GIGGEGELDW FMSEPAAIGQ PMEGLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-14111164154Putative transcription factor PCF6
5zkt_B6e-14111164154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5785828e-74KM578582.1 Ischaemum santapaui isolate TK021-6 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5785838e-74KM578583.1 Ischaemum santapaui isolate TK021-8 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5785858e-74KM578585.1 Ischaemum santapaui isolate TK021-2 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786208e-74KM578620.1 Paspalum malacophyllum isolate TK058-6 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786218e-74KM578621.1 Paspalum malacophyllum isolate TK058-1 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786228e-74KM578622.1 Paspalum malacophyllum isolate TK058-7 retarded palea 1 protein (rep1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186977.11e-173transcription factor TCP12-like
TrEMBLA0A3B6D4J21e-172A0A3B6D4J2_WHEAT; Uncharacterized protein
TrEMBLR7W9G11e-172R7W9G1_AEGTA; Uncharacterized protein
STRINGEMT181431e-172(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-27TCP family protein