PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT18279

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

FAR1

Protein Properties

Length: 875aa MW: 98709.4 Da PI: 9.1275

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT18279	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.5	5.1e-14	372	447	2	77
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwe 77 f+++YA++vGF ++s+s++s+ +++ k+ f+C+keg++++ +++ +kerr++ rt+C +++ k+++ + kw+ EMT18279 372 FFCRYARKVGFAAKRSTSRRSTYDQQLDKQVFQCTKEGQNKTIERH-VKERRSNCLIRTSCPVQITAKRDTdRRKWR 447 9***************************************9999.********************99788886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-11	372	447	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.087	642	678	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50158	8.911	806	822	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MEMFKSASSG QDNRDGRSLN DIGKDYGRQE HGVQQTPAKR SILSSRDSTK QIVQTQMPTK 60 AQSGRCDGPA FVGGHNEEVQ GNKISFDVRR RIIGNKSIGV QGFGMVCTSK KSPATKSNIG 120 AISSTIQQHQ KALQVYEEGS KYRRSPRIDE NIRQGPLKGS PVAFNMRGPS KGSPMAFKIV 180 SEITNARRLS PRFAGQERHG KTKDLAEGIT DEGKKYHSSL SISKETQHSQ QQVAYNANTD 240 CMVEAAQSLG CTSVGETGGS IAQCNIGEAD SFMDLAVPCR NDAAACDKQQ SSSSSAVSGP 300 MAGDETDVVR SECDQTNEDT VDIIIMAPPT IVEKEMDDMF KEGIYPTIQE VTEALEPEGG 360 MVFGSLDECF LFFCRYARKV GFAAKRSTSR RSTYDQQLDK QVFQCTKEGQ NKTIERHVKE 420 RRSNCLIRTS CPVQITAKRD TDRRKWRRPG FHHVEETENN VVRSLFWTDS LYQDEFERTW 480 KAAISVHKAE GNKHLNTLWE LRNFWVPSYF KDCFYPFSST TTRGESTNSM WKNYVNHRDT 540 IKRFVDVYHM IQQNCLATLD KKRHRIEEKV PSLETGFPIE RQASEVYTNE IFRKLQLELR 600 NRTYLKCSDL AKGRQYFFKK IIEPGEKVWK PYPGEEFDRS EFRVDVDEQK EIYSCRCKKM 660 SRDGIQCCHV LKVMDQTGMI DQLPKSFVIP RWSRNLSESL KVLSTSQGDS MTIQDDETMR 720 FGLAYAELSD ICSNACRKEK ASRVWRECTV DMKIKVMAAL AEEPDTGILA ETLKNPPMSG 780 SKGTKKGDRI KAGSEKKGKG NKAASKCGRC GVKGHRKTNC PDNPEVQERM RIEEEKRKSQ 840 QEKRARSMKW ATTPTTPSWK SNGSGQCTPS PGGKS

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MEMFKSASSG QDNRDGRSLN DIGKDYGRQE HGVQQTPAKR SILSSRDSTK QIVQTQMPTK  60
AQSGRCDGPA FVGGHNEEVQ GNKISFDVRR RIIGNKSIGV QGFGMVCTSK KSPATKSNIG  120
AISSTIQQHQ KALQVYEEGS KYRRSPRIDE NIRQGPLKGS PVAFNMRGPS KGSPMAFKIV  180
SEITNARRLS PRFAGQERHG KTKDLAEGIT DEGKKYHSSL SISKETQHSQ QQVAYNANTD  240
CMVEAAQSLG CTSVGETGGS IAQCNIGEAD SFMDLAVPCR NDAAACDKQQ SSSSSAVSGP  300
MAGDETDVVR SECDQTNEDT VDIIIMAPPT IVEKEMDDMF KEGIYPTIQE VTEALEPEGG  360
MVFGSLDECF LFFCRYARKV GFAAKRSTSR RSTYDQQLDK QVFQCTKEGQ NKTIERHVKE  420
RRSNCLIRTS CPVQITAKRD TDRRKWRRPG FHHVEETENN VVRSLFWTDS LYQDEFERTW  480
KAAISVHKAE GNKHLNTLWE LRNFWVPSYF KDCFYPFSST TTRGESTNSM WKNYVNHRDT  540
IKRFVDVYHM IQQNCLATLD KKRHRIEEKV PSLETGFPIE RQASEVYTNE IFRKLQLELR  600
NRTYLKCSDL AKGRQYFFKK IIEPGEKVWK PYPGEEFDRS EFRVDVDEQK EIYSCRCKKM  660
SRDGIQCCHV LKVMDQTGMI DQLPKSFVIP RWSRNLSESL KVLSTSQGDS MTIQDDETMR  720
FGLAYAELSD ICSNACRKEK ASRVWRECTV DMKIKVMAAL AEEPDTGILA ETLKNPPMSG  780
SKGTKKGDRI KAGSEKKGKG NKAASKCGRC GVKGHRKTNC PDNPEVQERM RIEEEKRKSQ  840
QEKRARSMKW ATTPTTPSWK SNGSGQCTPS PGGKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	441	448	DRRKWRRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	N1QZZ0	0.0	N1QZZ0_AEGTA; Protein FAR1-RELATED SEQUENCE 5
STRING	EMT18279	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-22	FAR1-related sequence 5