PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT18288

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 494aa MW: 52691 Da PI: 6.4705

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT18288	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.4e-14	291	337	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs +++Lr+llP+ +K +Ka+ L ++++++k+L EMT18288 291 KSHSEAERRRRERINSHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 337 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.168	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-11	291	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-16	292	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-15	292	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-14	294	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.03E-5	301	340	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.2E-4	375	424	No hit	No description
CDD	cd04873	5.60E-8	375	432	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MGAHGDRRRH RREEVGVLLD EEEEELEHHA RACGGATSGL VDQELGGCQE GGGGMVFEAS 60 SSVGSVSATM GPPPIMCWPP PAPSLSPQEP LHRATHHHHN IGIGGQGPFF PLLPPLPPQP 120 PPPPPFLADF YARRALQFAY DHSGGASSSS DPLGFGAGLY MGHHGSPVHG TDDAAAFGRR 180 LRDFGRMPRR RSWTPTALAA SKTPTAEPSS SAALLADFYA RRALQFAYDH SGGASSSSDP 240 LGFGAGLYMG HHGSPVHGMM MPPPFGASPF GDFGRMTAQE IMDAKALAAS KSHSEAERRR 300 RERINSHLAR LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSEIREEACP LPTEADELTV 360 DASSDEDGRL LVRASLCCDD RPDLLPDLIR ALKALRLRAL KAEITTLGGR VKNVLVVTED 420 DSIACDGDQQ DEDGGMQAPM SPQHAVASIQ EALRAVMERT SSSSGAEDSG GSASGGLKRQ 480 RTTSLSAILE NRSI

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MGAHGDRRRH RREEVGVLLD EEEEELEHHA RACGGATSGL VDQELGGCQE GGGGMVFEAS  60
SSVGSVSATM GPPPIMCWPP PAPSLSPQEP LHRATHHHHN IGIGGQGPFF PLLPPLPPQP  120
PPPPPFLADF YARRALQFAY DHSGGASSSS DPLGFGAGLY MGHHGSPVHG TDDAAAFGRR  180
LRDFGRMPRR RSWTPTALAA SKTPTAEPSS SAALLADFYA RRALQFAYDH SGGASSSSDP  240
LGFGAGLYMG HHGSPVHGMM MPPPFGASPF GDFGRMTAQE IMDAKALAAS KSHSEAERRR  300
RERINSHLAR LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSEIREEACP LPTEADELTV  360
DASSDEDGRL LVRASLCCDD RPDLLPDLIR ALKALRLRAL KAEITTLGGR VKNVLVVTED  420
DSIACDGDQQ DEDGGMQAPM SPQHAVASIQ EALRAVMERT SSSSGAEDSG GSASGGLKRQ  480
RTTSLSAILE NRSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	301	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK377163	0.0	AK377163.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3150E20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189500.1	0.0	transcription factor bHLH30-like
Swissprot	Q9S7Y1	6e-73	BH030_ARATH; Transcription factor bHLH30
TrEMBL	N1R286	0.0	N1R286_AEGTA; Transcription factor bHLH30
STRING	EMT18288	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	7e-44	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]