PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT18413

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

M-type_MADS

Protein Properties

Length: 148aa MW: 16736 Da PI: 9.6315

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT18413	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.2	7.7e-27	47	95	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rie+ + rqv fskRr g++KKA+ELSvLCdaeva+++fs+ g+lye+ EMT18413 47 RIEDRTSRQVRFSKRRSGLFKKAFELSVLCDAEVALVVFSPAGRLYEFV 95 8***********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-32	38	97	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.815	38	98	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-28	40	114	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-28	40	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.39E-31	43	99	No hit	No description
Pfam	PF00319	2.3E-26	47	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-28	60	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-28	75	96	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSEDVGRRRM QQQQQEEEDE SLKAAAAAVE EGGGKRKRKR GRVELRRIED RTSRQVRFSK 60 RRSGLFKKAF ELSVLCDAEV ALVVFSPAGR LYEFVSSDTS VEQIFGRCKD IPDMVIDDLN 120 IAARDSRGYC NIQVVGRYRK GSCPGGMI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n6j_A	2e-17	40	98	2	60	Myocyte-specific enhancer factor 2B
1n6j_B	2e-17	40	98	2	60	Myocyte-specific enhancer factor 2B
1tqe_P	1e-17	40	98	3	61	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-17	40	98	3	61	Myocyte-specific enhancer factor 2B
1tqe_R	1e-17	40	98	3	61	Myocyte-specific enhancer factor 2B
1tqe_S	1e-17	40	98	3	61	Myocyte-specific enhancer factor 2B
6c9l_A	1e-17	40	98	3	61	Myocyte-specific enhancer factor 2B
6c9l_B	1e-17	40	98	3	61	Myocyte-specific enhancer factor 2B
6c9l_C	1e-17	40	98	3	61	Myocyte-specific enhancer factor 2B
6c9l_D	1e-17	40	98	3	61	Myocyte-specific enhancer factor 2B
6c9l_E	1e-17	40	98	3	61	Myocyte-specific enhancer factor 2B
6c9l_F	1e-17	40	98	3	61	Myocyte-specific enhancer factor 2B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181042.1	4e-91	MADS-box transcription factor 51-like
TrEMBL	R7WA23	1e-101	R7WA23_AEGTA; MADS-box transcription factor 56
STRING	EMT18413	1e-102	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	8e-26	AGAMOUS-like 14