PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18449
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 208aa    MW: 23434.3 Da    PI: 7.2363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18449genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-0987134455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++ L+
  EMT18449  87 SHSLAERARREKITERMKILQDLVPGC----NKVIGKASVLDEIINYVQALE 134
               8*************************9....677**************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-1781150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.90E-981138No hitNo description
PROSITE profilePS5088815.66383133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-1883154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-787134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-989139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTEFLGDSWW LMDKQLNPIN FLQHLTTKTD AEAKRFKANK SSDENGSFRK DAEADSRNAS  60
KAVDQNPPPP KQDFIHVRAR RGQATDSHSL AERARREKIT ERMKILQDLV PGCNKVIGKA  120
SVLDEIINYV QALERQIEFL SMKLEAVNAH AHAHNGVETF PTKDFAAPTY NTAPGLTFDP  180
QTPREYAQGS PAAEWLHMQI GGTYERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692631e-131AK369263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2087O19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152106.11e-132transcription factor bHLH79-like
SwissprotQ84T081e-103BH089_ORYSJ; Transcription factor BHLH089
TrEMBLR7WEZ61e-155R7WEZ6_AEGTA; Transcription factor bHLH79
STRINGEMT184491e-156(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-63BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]